Tandem mass spectrometry (MS/MS) has been a widely applied in community proteomics (metaproteomics) for identifying peptides and proteins. We develop computational identification tools and apply these tools to solve real-world problems.
Sipros 3 Source Code
Download the tool for converting mzML format to FT2 format.
Citation
- Nicholas B. Justice, Zhou Li, Yingfeng Wang, Susan E. Spaudling, Annika C. Mosier, Robert L. Hettich, Chongle Pan, and Jillian Banfield, “15N- and 2H Proteomic Stable Isotope Probing Links Nitrogen Flow to Archaeal Heterotrophic Activity,” Environmental Microbiology, vol. 16, no.10, pp. 3224-3237, 2014.
- Zhou Li, Yingfeng Wang, Qiuming Yao, Nicholas Justice, Tae-Hyuk Ahn, Dong Xu, Robert Hettich, Jillian Banfield, and Chongle Pan, “Diverse and Divergent Protein Post-translational Modifications in Two Growth Stages of A Natural Microbial Community,” Nature Communications, vol 5, no. 4405, 2014.
- Yingfeng Wang, Tae-Hyuk Ahn, Zhou Li, and Chongle Pan, “Sipros/ProRata: A Versatile Informatics system for Quantitative Community Proteomics,” Bioinformatics, vol 29, no 16, pp 2064-2065, 2013.